I was able to fix the issue by installing the windows program all over again. Then BCD to remove the other partition. It was the same when i installed the new hd and put windows 10 on it. BCD fixed the issue with the selection of drive. It now works like it should. It gives me the option of which drive i want,(windows 7, windows 10), The other partition for the linux is removed and the disc space for that partition has been removed and migrated to the rest of windows 7. Each drive has only one os now. Was a PITA but It worked. I haven't had any problems since. My older programs are on w7 and my newer programs are on both w7 and w10. Right now i am using w10. I am also glad that both os are really stable. I had one older program that was giving me a little issue but tweaking it has made it work pretty good. I have the best of both worlds right now and hope i never have to go threw this again.