8800 GTS 320MB sometimes working at 1/3 of it's speed

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well the problem is that the pcie runs at 1x rather than 16x and i see lots of these kind of problems but i don't know if the bios or my overclock is making this happen i tried stock voltages stock fsb and everything at stock and it worked at 16x so i think there is a problem with the bios or something and i have the latest bios and i don't use the pcie 1x slot on my motherboard but i use a pcie graphics card wihch is 8800 gts 320mb
 
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